Kuzey İran’daki <i>Trichostrongylus</i> Türünden (Nematoda: Trichostrongylidae) Mitokondriyal Cytochrome <i>c</i> oxidase subunit 1 (<i>Cox1</i>) Geninin Moleküler Karakterizasyonu
PDF
Atıf
Paylaş
Talep
P: 28-33
Mart 2023

Kuzey İran’daki Trichostrongylus Türünden (Nematoda: Trichostrongylidae) Mitokondriyal Cytochrome c oxidase subunit 1 (Cox1) Geninin Moleküler Karakterizasyonu

Turkiye Parazitol Derg 2023;47(1):28-33
Bilgi mevcut değil.
Bilgi mevcut değil
Alındığı Tarih: 28.02.2022
Kabul Tarihi: 19.09.2022
Yayın Tarihi: 02.03.2023
PDF
Atıf
Paylaş
Talep

ÖZET

Amaç:

Bu çalışmanın amacı, İran’ın kuzeyindeki Guilan eyaletindeki Trichostrongylus türlerinin moleküler analiz ve ayrıca mitokondriyal Cytochrome c oxidase subunit 1 (Cox1) geni ile Trichostrongylus türlerinin filogenetik ilişkilerinin belirlenmesidir.

Yöntemler:

Guilan ilindeki koyun, keçi ve sığırlardan 144 hayvanın abomasum ve duodenum içerikleri toplanmıştır. İlk tarama için morfolojik inceleme yapıldı. Toplam DNA ekstrakte edildi ve Cox1 geninin kısmi bölgesi amplifiye edildi ve sekanslandı. Genetik çeşitlilik hesaplandı ve nükleotid dizisine ilişkin verilerin filogenetik analizi MEGA7 yazılımı ile yapıldı.

Bulgular:

T. colubriformis, T. vitrinus ve T. axei dahil olmak üzere üç Trichostrongylus türü morfolojik özelliklerle tanımlanmıştır. Bu çalışmada türler içindeki genetik farklılık T. axei (%0-2,5), T. colubriformis (%0,77) ve T. vitrinus (%0) için gözlenmiştir. Bu çalışmada elde edilen üç Trichostrongylus türü arasındaki ortalama türler arası fark %14,4-15,4 olmuştur.

Sonuç:

Trichostrongylus spp. üyelerinin Cox1 dizileri. oldukça değişkendi ve bu, biyoçeşitlilik hakkında uygun bir değerlendirme elde etmek için değerli bir ölçü olarak kullanılabilirdi. Bu nematod cinsinin filogenetik ilişkilerini yeniden yapılandırmak için diğer Trichostrongylus türlerinden dizi verisi oluşturulması gerekecektir.

References

1
Roberts L, Janovy J. Foundations of parasitology. 8th edn. 701 pp. New York, McGraw-Hill; 2009.
2
Sharifdini M, Heidari Z, Hesari Z, Vatandoost S, Kia EB. Molecular phylogenetics of Trichostrongylus species (Nematoda: Trichostrongylidae) from humans of Mazandaran province, Iran. Korean J Parasitol 2017; 55: 279-85.
3
Ghanbarzadeh L, Saraei M, Kia E, Amini F, Sharifdini M. Clinical and haematological characteristics of human trichostrongyliasis. J Helminthol 2018; 93: 149-53.
4
Wall EC, Bhatnagar N, Watson J, Doherty T. An unusual case of hypereosinophilia and abdominal pain: an outbreak of Trichostrongylus imported from New Zealand. J Travel Med 2011; 18: 59-60.
5
da Rocha LO, da Silva Lemos GC, Vieira IJC, Braz-Filho R, de Paiva Freitas S, Glória LS, et al. Chemical characterization and in vitro biological activity of Cymbopogon citratus extracts against Haemonchus spp. and Trichostrongylus spp. nematodes from sheep. Parasitology 2020; 147: 1559-68.
6
McLeod R. Costs of major parasites to the Australian livestock industries. Int J Parasitol 1995; 25: 1363-7.
7
Phosuk I, Intapan PM, Sanpool O, Janwan P, Thanchomnang T, Sawanyawisuth K, et al. Molecular evidence of Trichostrongylus colubriformis and Trichostrongylus axei infections in humans from Thailand and Lao PDR. Am J Trop Med Hyg 2013; 89: 376-9.
8
Sharifdini M, Derakhshani S, Alizadeh SA, Ghanbarzadeh L, Mirjalali H, Mobedi I, et al. Molecular identification and phylogenetic analysis of human Trichostrongylus species from an endemic area of Iran. Acta Trop  2017; 176: 293-9.
9
Ghadirian E. Human infection with Trichostrongylus lerouxi (Biocca, Chabaud, and Ghadirian, 1974) in Iran. Am J Trop Med Hyg 1977; 26: 1212-3.
10
Ghadirian E, Arfaa F, Sadighian A. Human infection with Trichostrongylus capricola in Iran. Am J Trop Med Hyg 1974; 23: 1002-3.
11
Ghasemikhah R, Mirhendi H, Kia E, Mowlavi G, Sarmadian H, Meshgi B, et al. Morphological and morphometrical description of Trichostrongylus species isolated from domestic ruminants in Khuzestan province, southwest Iran. Iran J Parasitol 2011; 6: 82.
12
Shahbazi A, Fallah E, Koshki MK, Nematollahi A, Ghazanchaei A, Asfaram S. Morphological characterization of the Trichostrongylus species isolated from sheep in Tabriz, Iran. Research Opinions in Animal and Veterinary Sciences 2012; 2: 309-12.
13
Ashrafi K, Sharifdini M, Heidari Z, Rahmati B, Kia EB. Zoonotic transmission of Teladorsagia circumcincta and Trichostrongylus species in Guilan province, northern Iran: molecular and morphological characterizations. BMC Infect Dis 2020; 20: 1-9.
14
Ashrafi K, Tahbaz A, Sharifdini M, Mas-Coma S. Familial Trichostrongylus infection misdiagnosed as acute fascioliasis. Emerg Infect Dis 2015; 21: 1869.
15
Ghadirian E, Arfaa F. Present status of trichostrongyliasis in Iran. Am J Trop Med Hyg 1975; 24: 935-41.
16
Sharifdini M, Ghanbarzadeh L, Barikani A, Saraei M. Prevalence of intestinal parasites among rural inhabitants of Fouman, Guilan Province, Northern Iran with emphasis on Strongyloides stercoralis. Iran J Parasitol 2020; 15: 91.
17
Gholami S, Babamahmoodi F, Abedian R, Sharif M, Shahbazi A, Pagheh A, et al. Trichostrongylus colubriformis: possible most common cause of human infection in Mazandaran province, North of Iran. Iran J Parasitol 2015; 10: 110-5.
18
Anvari-Tafti M, Sazmand A, Hekmatimoghaddam S, Moobedi I. Gastrointestinal helminths of camels (Camelus dromedarius) in center of Iran. Trop Biomed 2013; 30: 56-61.
19
Borji H, Razmi GR, Movasaghi A, Naghibi AA, Maleki M. S A study on gastrointestinal helminths of camels in Mashhad abattoir, Iran. Iranian Journal of Veterinary Research, Shiraz University 2010; 11: 174-9.
20
Biocca E, Chabaud A, Ghadirian E. [Trichostrongylus lerouxi n. sp., parasite of Bos taurus]. Parassitologia 1974; 16: 199-207.
21
Ghasemikhah R, Sharbatkhori M, Mobedi I, Kia E, Harandi MF, Mirhendi H. Sequence analysis of the second internal transcribed spacer (ITS2) region of rDNA for species identification of Trichostrongylus nematodes isolated from domestic livestock in Iran. Iran J Parasitol 2012; 7: 40-6.
22
de Bellocq JG, Ferte H, Depaquit J, Justine JL, Tillier A, Durette-Desset MC. Phylogeny of the Trichostrongylina (Nematoda) inferred from 28S rDNA sequences. Mol Phylogenet Evol 2001; 19: 430-42.
23
Hoberg EP, Monsen KJ, Kutz S, Blouin MS. Structure, biodiversity, and historical biogeography of nematode faunas in holarctic ruminants: morphological and molecular diagnoses for Teladorsagia boreoarcticus n. sp.(Nematoda: Ostertagiinae), a dimorphic cryptic species in muskoxen (Ovibos moschatus). J Parasitol 1999; 85: 910-34.
24
von Samson-Himmelstjerna G, Harder A, Schnieder T. Quantitative analysis of ITS2 sequences in trichostrongyle parasites. Int J Parasitol 2002; 32: 1529-35.
25
Pandi M, Sharifdini M, Ashrafi K, Atrkar Roushan Z, Rahmati B, Hajipour N. Comparison of Molecular and Parasitological Methods for Diagnosis of Human Trichostrongylosis. Front Cell Infect Microbiol 2021; 11: 759396.
26
dos Santos LL, Prosdocimi F, Lima NCB, da Costa IR, Cardoso DC, Drummond MG, et al. Comparative genomics and phylogenomics of Trichostrongyloidea mitochondria reveal insights for molecular diagnosis and evolutionary biology of nematode worms. Gene Reports 2017; 9: 65-73.
27
Hu M, Chilton NB, Gasser RB. The mitochondrial genomics of parasitic nematodes of socio-economic importance: recent progress, and implications for population genetics and systematics. Adv Parasitol 2004; 56: 134-213.
28
Saccone C, De Giorgi C, Gissi C, Pesole G, Reyes A. Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system. Gene 1999; 238: 195-209.
29
Ahmad AA, Yang X, Zhang T, Wang C, Zhou C, Yan X, et al. Characterization of the complete mitochondrial genome of Ostertagia trifurcata of small ruminants and its phylogenetic associations for the Trichostrongyloidea superfamily. Genes (Basel) 2019; 10: 107.
30
Archie EA, Ezenwa VO. Population genetic structure and history of a generalist parasite infecting multiple sympatric host species. Int J Parasitol 2011; 41: 89-98.
31
Jex AR, Hall RS, Littlewood DTJ, Gasser RB. An integrated pipeline for next-generation sequencing and annotation of mitochondrial genomes. Nucleic Acids Res 2010; 38: 522-33.
32
Kuchboev A, Sobirova K, Karimova R, Amirov O, von Samson-Himmelstjerna G, Krücken J. Molecular analysis of polymorphic species of the genus Marshallagia (Nematoda: Ostertagiinae). Parasit Vectors 2020; 13: 411.
33
Palevich N, Maclean PH, Choi YJ, Mitreva M. Characterization of the complete mitochondrial genomes of two sibling species of parasitic roundworms, Haemonchus contortus and Teladorsagia circumcincta. Front Genet 2020; 11: 573395.
34
Sun MM, Han L, Zhang FK, Zhou DH, Wang SQ, Ma J, et al. Characterization of the complete mitochondrial genome of Marshallagia marshalli and phylogenetic implications for the superfamily Trichostrongyloidea. Parasitol Res 2018; 117: 307-13.
35
Dame JB, Blouin MS, Courtney CH. Genetic structure of populations of Ostertagia ostertagi. Vet Parasitol 1993; 46: 55-62.
36
Dey AR, Zhang Z, Begum N, Alim A, Hu M, Alam MZ. Genetic diversity patterns of Haemonchus contortus isolated from sheep and goats in Bangladesh. Infect Genet Evol 2019; 68: 177-84.
37
Hosseinnezhad H, Sharifdini M, Ashrafi K, Atrkar Roushan Z, Mirjalali H, Rahmati B. Trichostrongyloid nematodes in ruminants of northern Iran: prevalence and molecular analysis. BMC Vet Res 2021; 17: 371.
38
Barghandan T, Hajialilo E, Sharifdini M, Javadi A. Prevalence and phylogenetic analysis of gastrointestinal helminths (Nematoda: Trichostrongylidae) in ruminant livestock of northwest Iran. Ankara Üniv Vet Fak Derg 2019; 67: 65-72.
39
Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol 1994; 3: 294-9.
40
Librado P, Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009; 25: 1451-2.
41
Abuhay M, Hamid M, Tintagu T. Prevalence and Species Composition of Abomasal Nematodes of Cattle slaughtered at Abergelle Export Abattoir, Mekelle, Ethiopia. International Journal of Veterinary Science & Technology 2018; 2: 33-7.
42
Alemi A, Arfaa F. Prevalence of intestinal helminthiasis in the rural area of gilan province (caspian littoral). Iranian Journal of Public Health 1978; 25-34.
43
Massoud J, Arfaa F, Jalali H, Keyvan S. Prevalence of intestinal helminths in Khuzestan, Southwest Iran, 1977. Am J Trop Med Hyg 1980; 29: 389-92.
44
Holterman M, van der Wurff A, van den Elsen S, van Megen H, Bongers T, Holovachov O, et al. Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades. Mol Biol Evol 2006; 23: 1792-800.
45
Kiewnick S, Holterman M, van den Elsen S, van Megen H, Frey JE, Helder J. Comparison of two short DNA barcoding loci (COI and COII) and two longer ribosomal DNA genes (SSU & LSU rRNA) for specimen identification among quarantine root-knot nematodes (Meloidogyne spp.) and their close relatives. European Journal of Plant Pathology 2014; 140: 97-110.
46
Nadler SA, Hudspeth DS. Phylogeny of the Ascaridoidea (Nematoda: Ascaridida) based on three genes and morphology: hypotheses of structural and sequence evolution. J Parasitol 2000; 86: 380-93.
47
Otranto D, Testini G, De Luca F, Hu M, Shamsi S, Gasser R. Analysis of genetic variability within Thelazia callipaeda (Nematoda: Thelazioidea) from Europe and Asia by sequencing and mutation scanning of the mitochondrial cytochrome c oxidase subunit 1 gene. Mol Cell Probes 2005; 19: 306-13.
2024 ©️ Galenos Publishing House